../../tmp/servers/virsirnadb/1023596649
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi2277 | 1 | ggcgcagcttcgacgtcatat | 21 | |
| EF407439.1 | Hepatitis C virus isolate 8003 polyprotein gene, complete cds | 1051 | .a................... | 1071 | 95 |
| EU482873.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V28/2003, complete | 1017 | .a................... | 1037 | 95 |
| EU155284.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V317/2001, complet | 1040 | ..................c.. | 1060 | 95 |
| EU155286.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V319/2001, complet | 1001 | .a................... | 1021 | 95 |
| EU155342.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V197/1989, complet | 1001 | .a................... | 1021 | 95 |
| EU255950.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V241/2005, complet | 1024 | .a................... | 1044 | 95 |
| EU255958.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V265/2005, complet | 1032 | .a................... | 1052 | 95 |
| EU256094.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V74/2004, complete | 1033 | .a................... | 1053 | 95 |
| EU256025.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V79/2002, complete | 1002 | ..................c.. | 1022 | 95 |
| FJ024087.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1705/2007, comple | 1033 | ..................c.. | 1053 | 95 |
| FJ390399.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1751/2007, comple | 977 | ...............g..... | 997 | 95 |
| EU862839.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V175/1990, complet | 1034 | .a................... | 1054 | 95 |
| M67463.1 | HPCCGAA Hepatitis C virus subtype 1a, complete genome | 1108 | __................... | 1126 | 90 |
| AF011751.1 | Hepatitis C virus strain H77 pCV-H77C polyprotein gene, complete cds | 1108 | __................... | 1126 | 90 |
| AF011752.1 | Hepatitis C virus strain H77 pCV-H11 polyprotein gene, complete cds | 1108 | __................... | 1126 | 90 |
| AF011753.1 | Hepatitis C virus strain H77 pH21 polyprotein gene, complete cds | 1108 | __................... | 1126 | 90 |
| AF290978.1 | Hepatitis C virus subtype 1a isolate colonel, complete genome | 1096 | __................... | 1114 | 90 |
| AF511950.1 | Hepatitis C virus isolate XF224 polyprotein-like gene, complete seque | 1080 | __................... | 1098 | 90 |
| EU363761.1 | Recombinant Hepatitis C virus H77C/JFH1, complete genome | 1107 | __................... | 1125 | 90 |
| EU155272.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V404/2006, complet | 1004 | __................... | 1022 | 90 |
| EU155313.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V413/2003, complet | 1016 | __................... | 1034 | 90 |
| EU155319.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V424/2002, complet | 986 | __................... | 1004 | 90 |
| EU155346.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V236/2005, complet | 1030 | __................... | 1048 | 90 |
| EU529677.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V52/2006, complete | 1036 | __................... | 1054 | 90 |
| EU529681.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V251/2005, complet | 1024 | __................... | 1042 | 90 |
| EU256044.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V378/2001, complet | 1013 | __................... | 1031 | 90 |
| EU256049.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V395/2006, complet | 1034 | __................... | 1052 | 90 |
| EU256051.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V4/2005, complete | 1030 | __................... | 1048 | 90 |
| EU256070.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V232/2003, complet | 1027 | __................... | 1045 | 90 |
| EU256074.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V264/2005, complet | 1032 | __................... | 1050 | 90 |
| EU255973.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V180/1990, complet | 1029 | __................... | 1047 | 90 |
| AF009606.1 | Hepatitis C virus subtype 1a polyprotein gene, complete cds | 1108 | __................... | 1126 | 90 |
| EF407424.1 | Hepatitis C virus isolate 5069 polyprotein gene, partial cds | 1031 | _.................c.. | 1050 | 90 |
| EF407441.1 | Hepatitis C virus isolate 1036 polyprotein gene, complete cds | 1066 | _.................c.. | 1085 | 90 |
| EF407445.1 | Hepatitis C virus isolate 5009 polyprotein gene, complete cds | 1028 | _.................c.. | 1047 | 90 |
| EU234063.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V177/1992, complet | 1028 | _.................c.. | 1047 | 90 |
| EU255981.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V191/1990, complet | 1040 | _.................c.. | 1059 | 90 |
| EU155265.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V388/2005, complet | 1029 | ___.................. | 1046 | 85 |
| D10749.1 | HPCHCJ1 Hepatitis C virus genomic RNA, complete genome, isolate: HC-J1 | 1106 | .a................c.. | 1126 | 90 |
| M62321.1 | HPCPLYPRE Hepatitis C virus subtype 1a, complete genome | 1106 | .a................c.. | 1126 | 90 |
| AF271632.1 | Hepatitis C virus subtype 1a clone pHCV-1/SF9 A, complete genome | 1106 | .a................c.. | 1126 | 90 |
| EF407431.1 | Hepatitis C virus isolate 3005 polyprotein gene, complete cds | 1004 | .a................c.. | 1024 | 90 |
| EF407436.1 | Hepatitis C virus isolate 7040 polyprotein gene, complete cds | 1011 | .a................c.. | 1031 | 90 |
| EF407455.1 | Hepatitis C virus isolate 7065 polyprotein gene, complete cds | 1066 | .a................c.. | 1086 | 90 |
| EU155241.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V71/2002, complete | 1002 | .a.............g..... | 1022 | 90 |
| EU362880.1 | Hepatitis C virus isolate 2011_FU24 polyprotein (pol) gene, partial c | 1027 | .a................c.. | 1047 | 90 |
| EU362891.1 | Hepatitis C virus isolate 7003_FU24 polyprotein (pol) gene, partial c | 1028 | .a................c.. | 1048 | 90 |
| EU362893.1 | Hepatitis C virus isolate 7040_FU24 polyprotein (pol) gene, complete | 1014 | .a................c.. | 1034 | 90 |
| EU362897.1 | Hepatitis C virus isolate 7065_FU24 polyprotein (pol) gene, complete | 1065 | .a................c.. | 1085 | 90 |
| EU239715.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V423/2003, complet | 1032 | .a................c.. | 1052 | 90 |
| EU155213.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V101/2004, complet | 1035 | .a................c.. | 1055 | 90 |
| EU482836.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V506/2002, complet | 1037 | .a................c.. | 1057 | 90 |
| EU482842.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V389/2006, complet | 1011 | .a................c.. | 1031 | 90 |
| EU482850.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V186/1990, complet | 1001 | .a................c.. | 1021 | 90 |
| EU482863.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V456/2006, complet | 1036 | .a................c.. | 1056 | 90 |
| EU482865.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V46/2003, complete | 1012 | .a.............g..... | 1032 | 90 |
| EU155251.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V359/2006, complet | 1017 | .a................c.. | 1037 | 90 |
| EU155275.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V409/2006, complet | 1026 | .a................c.. | 1046 | 90 |
| EU155289.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V323/2001, complet | 1032 | .a................c.. | 1052 | 90 |
| EU155298.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V334/2002, complet | 1036 | .a................c.. | 1056 | 90 |
| EU155312.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V412/2000, complet | 1014 | .a................c.. | 1034 | 90 |
| EU155323.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V429/2002, complet | 1017 | .a................c.. | 1037 | 90 |
| EU155351.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V257/2003, complet | 1027 | .a................c.. | 1047 | 90 |
| EU155380.2 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V35/2004, complete | 1011 | .a.............c..... | 1031 | 90 |
| EU569722.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V215/1989, complet | 1040 | .a................c.. | 1060 | 90 |
| EU660385.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V258/2003, complet | 1015 | .a................c.. | 1035 | 90 |
| EU687193.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V1562/2005, comple | 1001 | .a................c.. | 1021 | 90 |
| EU255928.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V231/2003, complet | 1032 | .a................c.. | 1052 | 90 |
| EU255933.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V112/2003, complet | 1014 | .a................c.. | 1034 | 90 |
| EU255955.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V254/2002, complet | 1015 | .a................c.. | 1035 | 90 |
| EU255959.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V268/2003, complet | 999 | .a.......g........... | 1019 | 90 |
| EU256105.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V505/2001, complet | 1056 | .a.................g. | 1076 | 90 |
| EU256004.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V45/2005, complete | 1013 | .a................c.. | 1033 | 90 |
| EU256005.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V451/2006, complet | 1034 | .a................c.. | 1054 | 90 |
| EU256006.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V452/2006, complet | 1040 | .a................c.. | 1060 | 90 |
| EU256015.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V57/2004, complete | 1024 | .a................c.. | 1044 | 90 |
| EU256026.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V82/2002, complete | 1037 | .a................c.. | 1057 | 90 |
| EU256037.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V98/2004, complete | 1039 | .a.............a..... | 1059 | 90 |
| EU256048.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V394/2006, complet | 1032 | .a................c.. | 1052 | 90 |
| EU256050.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V397/2006, complet | 1033 | .a................c.. | 1053 | 90 |
| EU256058.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V8/2005, complete | 1018 | .a................c.. | 1038 | 90 |
| EU255966.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V170/1997, complet | 1037 | .a.............c..... | 1057 | 90 |
| EU255976.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V184/1992, complet | 1027 | .a................c.. | 1047 | 90 |
| EU255977.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V187/1991, complet | 1031 | .a................c.. | 1051 | 90 |
| EU255980.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V190/1990, complet | 1024 | .a................c.. | 1044 | 90 |
| EU255982.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V194/1990, complet | 1030 | .a................c.. | 1050 | 90 |
| EU255984.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V200/1990, complet | 1018 | .a................c.. | 1038 | 90 |
| EU255986.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V203/1989, complet | 1033 | .a................c.. | 1053 | 90 |
| FJ024275.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1708/2007, comple | 998 | .a................c.. | 1018 | 90 |
| FJ024276.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1710/2007, comple | 998 | .a.............a..... | 1018 | 90 |
| FJ024280.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1717/2007, comple | 1015 | .a................c.. | 1035 | 90 |
| EU862823.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V24/2003, complete | 1011 | .a................c.. | 1031 | 90 |
| FJ205867.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1709/2007, comple | 1054 | .a.............c..... | 1074 | 90 |
| FJ410172.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1746/2008, comple | 1000 | .a................c.. | 1020 | 90 |
| AJ278830.1 | Hepatitis C virus genomic RNA for polyprotein gene | 1108 | __................c.. | 1126 | 85 |
| AF511948.1 | Hepatitis C virus isolate XF222 polyprotein-like gene, complete seque | 1108 | __................c.. | 1126 | 85 |
| AF511949.1 | Hepatitis C virus isolate XF223 polyprotein-like gene, complete seque | 1108 | __................c.. | 1126 | 85 |
| EF032883.1 | Hepatitis C virus subtype 1a isolate 03-32_P1_10.16.03 polyprotein ge | 1030 | __................c.. | 1048 | 85 |
| EF032884.1 | Hepatitis C virus subtype 1a isolate 03-32_P2_5.14.04 polyprotein gen | 1009 | __................c.. | 1027 | 85 |
| EF032885.1 | Hepatitis C virus subtype 1a isolate 03-32_P4_11.5.05 polyprotein gen | 1029 | __................c.. | 1047 | 85 |
| EF621489.1 | Hepatitis C virus subtype 1a strain HC-TN, complete genome | 1108 | __................c.. | 1126 | 85 |
| EF407411.1 | Hepatitis C virus isolate 5043 polyprotein gene, complete cds | 1014 | __................c.. | 1032 | 85 |
| EF407413.1 | Hepatitis C virus isolate 5012 polyprotein gene, complete cds | 1055 | __................c.. | 1073 | 85 |
| EF407415.1 | Hepatitis C virus isolate 3018 polyprotein gene, complete cds | 1058 | __................c.. | 1076 | 85 |
| EF407418.1 | Hepatitis C virus isolate 7020 polyprotein gene, complete cds | 1052 | __................c.. | 1070 | 85 |
| EF407419.1 | Hepatitis C virus isolate 5003 polyprotein gene, complete cds | 1059 | __................c.. | 1077 | 85 |
| EF407421.1 | Hepatitis C virus isolate 8030 polyprotein gene, complete cds | 1011 | __................c.. | 1029 | 85 |
| EF407422.1 | Hepatitis C virus isolate 6001 polyprotein gene, complete cds | 1014 | __................c.. | 1032 | 85 |
| EF407426.1 | Hepatitis C virus isolate 8070 polyprotein genomic sequence | 1057 | __................c.. | 1075 | 85 |
| EF407427.1 | Hepatitis C virus isolate 6025 polyprotein gene, complete cds | 1055 | __................c.. | 1073 | 85 |
| EF407428.1 | Hepatitis C virus isolate 1024 polyprotein gene, complete cds | 1014 | __................c.. | 1032 | 85 |
| EF407432.1 | Hepatitis C virus isolate 1013 polyprotein gene, complete cds | 1069 | __................c.. | 1087 | 85 |
| EF407434.1 | Hepatitis C virus isolate 2011 polyprotein gene, complete cds | 1030 | __................c.. | 1048 | 85 |
| EF407435.1 | Hepatitis C virus isolate 5014 polyprotein gene, complete cds | 1025 | __................c.. | 1043 | 85 |
| EF407437.1 | Hepatitis C virus isolate 1030 polyprotein gene, complete cds | 1068 | __................c.. | 1086 | 85 |
| EF407440.1 | Hepatitis C virus isolate 7002 polyprotein gene, complete cds | 1056 | __.............g..... | 1074 | 85 |
| EF407444.1 | Hepatitis C virus isolate 6030 polyprotein gene, complete cds | 1029 | __................c.. | 1047 | 85 |
| EF407448.1 | Hepatitis C virus isolate 6018 polyprotein gene, partial cds | 1068 | __................c.. | 1086 | 85 |
| EF407449.1 | Hepatitis C virus isolate 2027 polyprotein gene, complete cds | 1068 | __................c.. | 1086 | 85 |
| EF407450.1 | Hepatitis C virus isolate 6020 polyprotein gene, complete cds | 1026 | __................c.. | 1044 | 85 |
| EF407457.1 | Hepatitis C virus isolate 1003 polyprotein gene, complete cds | 912 | __................c.. | 930 | 85 |
| EU155294.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V329/2002, complet | 1002 | __................c.. | 1020 | 85 |
| EU155345.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V221/2002, complet | 1016 | __................c.. | 1034 | 85 |
| EU155350.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V256/2003, complet | 989 | __................c.. | 1007 | 85 |
| EU260395.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V10/2005, complete | 1041 | __................c.. | 1059 | 85 |
| EU362877.1 | Hepatitis C virus isolate 1024_FU24 polyprotein (pol) gene, complete | 1013 | __................c.. | 1031 | 85 |
| EU362878.1 | Hepatitis C virus isolate 1030_FU24 polyprotein (pol) gene, partial c | 1068 | __................c.. | 1086 | 85 |
| EU362881.1 | Hepatitis C virus isolate 2027_FU24 polyprotein (pol) gene, partial c | 1069 | __................c.. | 1087 | 85 |
| EU362882.1 | Hepatitis C virus isolate 3005_FU24 polyprotein (pol) gene, complete | 1027 | __................c.. | 1045 | 85 |
| EU362885.1 | Hepatitis C virus isolate 5009_FU24 polyprotein (pol) gene, partial c | 1026 | __................c.. | 1044 | 85 |
| EU362887.1 | Hepatitis C virus isolate 6020_FU24 polyprotein (pol) gene, complete | 1026 | __................c.. | 1044 | 85 |
| EU362890.1 | Hepatitis C virus isolate 7002_FU24 polyprotein (pol) gene, partial c | 1067 | __.............g..... | 1085 | 85 |
| EU362895.1 | Hepatitis C virus isolate 7043_FU24 polyprotein (pol) gene, complete | 1026 | __................c.. | 1044 | 85 |
| EU362898.1 | Hepatitis C virus isolate 8012_FU24 polyprotein (pol) gene, complete | 1012 | __................c.. | 1030 | 85 |
| EU362899.1 | Hepatitis C virus isolate 1013q polyprotein (pol) gene, partial cds | 1069 | __................c.. | 1087 | 85 |
| EU362900.1 | Hepatitis C virus isolate 1030q polyprotein (pol) gene, partial cds | 1068 | __................c.. | 1086 | 85 |
| EU362901.1 | Hepatitis C virus isolate 2011q polyprotein (pol) gene, complete cds | 1030 | __................c.. | 1048 | 85 |
| EU362902.1 | Hepatitis C virus isolate 2027q polyprotein (pol) gene, partial cds | 1068 | __................c.. | 1086 | 85 |
| EU362907.1 | Hepatitis C virus isolate 7002q polyprotein (pol) gene, complete cds | 1056 | __.............g..... | 1074 | 85 |
| EU260396.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V11/2004, complete | 1011 | __................c.. | 1029 | 85 |
| EU234064.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V182/1990, complet | 1022 | __................c.. | 1040 | 85 |
| EU155215.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V105/2004, complet | 1003 | __.............g..... | 1021 | 85 |
| EU155238.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V465/2007, complet | 1034 | __.............g..... | 1052 | 85 |
| EU155239.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V54/2004, complete | 1026 | __.............g..... | 1044 | 85 |
| EU155242.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V73/2004, complete | 1025 | __................c.. | 1043 | 85 |
| EU155243.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V86/2005, complete | 1003 | __................c.. | 1021 | 85 |
| EU155244.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V90/2005, complete | 1049 | __................c.. | 1067 | 85 |
| EU482831.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V25/2003, complete | 1014 | __................c.. | 1032 | 85 |
| EU482832.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V33/2004, complete | 1018 | __................c.. | 1036 | 85 |
| EU482835.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V427/2002, complet | 1041 | __................c.. | 1059 | 85 |
| EU482837.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V17/2004, complete | 1025 | __.............g..... | 1043 | 85 |
| EU482838.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V361/2006, complet | 1040 | __................c.. | 1058 | 85 |
| EU482840.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V386/2004, complet | 1046 | __................c.. | 1064 | 85 |
| EU482843.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V435/2005, complet | 1035 | __................c.. | 1053 | 85 |
| EU482844.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V436/2006, complet | 1042 | __................c.. | 1060 | 85 |
| EU482845.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V438/2006, complet | 1041 | __................c.. | 1059 | 85 |
| EU482846.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V439/2000, complet | 1038 | __................c.. | 1056 | 85 |
| EU482847.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V5/2004, complete | 1025 | __................c.. | 1043 | 85 |
| EU482848.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V9/2005, complete | 1010 | __.....t............. | 1028 | 85 |
| EU482852.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V217/1989, complet | 1025 | __................c.. | 1043 | 85 |
| EU482853.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V227/2005, complet | 1027 | __................c.. | 1045 | 85 |
| EU482854.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V242/2001, complet | 1025 | __................c.. | 1043 | 85 |
| EU482855.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V249/2002, complet | 1019 | __................c.. | 1037 | 85 |
| EU482857.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V263/2005, complet | 1025 | __.............c..... | 1043 | 85 |
| EU482858.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V271/2006, complet | 1032 | __................c.. | 1050 | 85 |
| EU482866.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V460/2006, complet | 1041 | __.............g..... | 1059 | 85 |
| EU482867.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V461/2006, complet | 1041 | __................c.. | 1059 | 85 |
| EU482868.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V69/2002, complete | 1025 | __.............g..... | 1043 | 85 |
| EU482869.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V70/2002, complete | 1025 | __................c.. | 1043 | 85 |
| EU482871.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V77/2002, complete | 1017 | __................c.. | 1035 | 85 |
| EU482872.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V261/2004, complet | 1034 | __.t................. | 1052 | 85 |
| EU482882.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V410/2006, complet | 1018 | __.............g..... | 1036 | 85 |
| EU482884.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V38/2004, complete | 792 | __................c.. | 810 | 85 |
| EU482887.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V66/2002, complete | 1003 | __.............g..... | 1021 | 85 |
| EU482889.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V179/1990, complet | 1035 | __................c.. | 1053 | 85 |
| EU155248.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V336/2006, complet | 1026 | __................c.. | 1044 | 85 |
| EU155268.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V396/2006, complet | 1003 | __................c.. | 1021 | 85 |
| EU155270.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V399/2006, complet | 1025 | __................c.. | 1043 | 85 |
| EU155273.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V406/2006, complet | 977 | __.......g........... | 995 | 85 |
| EU155274.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V407/2006, complet | 979 | __................c.. | 997 | 85 |
| EU155276.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V432/2002, complet | 1027 | __................c.. | 1045 | 85 |
| EU155282.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V696/2006, complet | 1025 | __................c.. | 1043 | 85 |
| EU155285.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V318/2001, complet | 1016 | __................c.. | 1034 | 85 |
| EU155291.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V326/2002, complet | 1027 | __................c.. | 1045 | 85 |
| EU155293.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V328/2001, complet | 978 | __................c.. | 996 | 85 |
| EU155295.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V331/2002, complet | 1027 | __................c.. | 1045 | 85 |
| EU155296.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V332/2002, complet | 1024 | __................c.. | 1042 | 85 |
| EU155299.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V335/2003, complet | 1024 | __................c.. | 1042 | 85 |
| EU155310.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V357/2004, complet | 1023 | __..........g........ | 1041 | 85 |
| EU155314.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V414/2004, complet | 982 | __................c.. | 1000 | 85 |
| EU155320.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V425/2001, complet | 979 | __................c.. | 997 | 85 |
| EU155321.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V426/2001, complet | 982 | __................c.. | 1000 | 85 |
| EU155322.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V428/2001, complet | 1022 | __................c.. | 1040 | 85 |
| EU155338.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V169/1996, complet | 1026 | __................c.. | 1044 | 85 |
| EU155341.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V192/1992, complet | 1036 | __................c.. | 1054 | 85 |
| EU155343.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V214/1996, complet | 1027 | __................c.. | 1045 | 85 |
| EU155344.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V216/1990, complet | 1014 | __................c.. | 1032 | 85 |
| EU155348.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V240/2005, complet | 1017 | __................c.. | 1035 | 85 |
| EU155349.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V246/2005, complet | 1015 | __................c.. | 1033 | 85 |
| EU155352.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V262/2004, complet | 1034 | __................c.. | 1052 | 85 |
| EU234065.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V212/1990, complet | 1003 | __................c.. | 1021 | 85 |
| EU529676.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V39/2004, complete | 1040 | __................c.. | 1058 | 85 |
| EU529679.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V76/2002, complete | 1021 | __................c.. | 1039 | 85 |
| EU529680.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V80/2002, complete | 1039 | __................c.. | 1057 | 85 |
| EU595697.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V507/2001, complet | 1024 | __.............c..... | 1042 | 85 |
| EU595698.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V44/2001, complete | 1025 | __.......c........... | 1043 | 85 |
| EU660383.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V100/2004, complet | 1034 | __................c.. | 1052 | 85 |
| EU660387.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V701/2003, complet | 1025 | __................c.. | 1043 | 85 |
| EU255927.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V222/2003, complet | 1029 | __................c.. | 1047 | 85 |
| EU255929.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V233/2004, complet | 1034 | __................c.. | 1052 | 85 |
| EU255930.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V237/2005, complet | 1034 | __................c.. | 1052 | 85 |
| EU255931.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V108/2003, complet | 1034 | __................c.. | 1052 | 85 |
| EU255932.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V111/2005, complet | 1034 | __.............g..... | 1052 | 85 |
| EU255934.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V453/2006, complet | 1042 | __................c.. | 1060 | 85 |
| EU255935.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V462/2007, complet | 1038 | __................c.. | 1056 | 85 |
| EU255944.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V224/2003, complet | 1010 | __................c.. | 1028 | 85 |
| EU255945.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V225/2004, complet | 1027 | __................c.. | 1045 | 85 |
| EU255946.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V226/2005, complet | 1035 | __................c.. | 1053 | 85 |
| EU255949.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V235/2005, complet | 1034 | __................c.. | 1052 | 85 |
| EU255957.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V260/2004, complet | 1056 | __................c.. | 1074 | 85 |
| EU256060.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V360/2006, complet | 1028 | __................c.. | 1046 | 85 |
| EU256086.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V110/2003, complet | 1006 | __................c.. | 1024 | 85 |
| EU256095.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V81/2002, complete | 1038 | __.............g..... | 1056 | 85 |
| EU256107.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V36/2004, complete | 1035 | __................c.. | 1053 | 85 |
| EU255993.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V102/2004, complet | 1034 | __................c.. | 1052 | 85 |
| EU255996.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V107/2003, complet | 1039 | __................c.. | 1057 | 85 |
| EU255997.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V109/2003, complet | 1005 | __.............g..... | 1023 | 85 |
| EU255998.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V113/2001, complet | 1035 | __.............g..... | 1053 | 85 |
| EU255999.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V116/2002, complet | 1021 | __.......c........... | 1039 | 85 |
| EU256007.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V464/2006, complet | 1024 | __................c.. | 1042 | 85 |
| EU256009.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V49/2004, complete | 1021 | __................c.. | 1039 | 85 |
| EU256010.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V50/2002, complete | 1003 | __................c.. | 1021 | 85 |
| EU256011.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V51/2004, complete | 1003 | __................c.. | 1021 | 85 |
| EU256012.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V511/2006, complet | 1042 | __.............g..... | 1060 | 85 |
| EU256018.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V60/2002, complete | 1023 | __................c.. | 1041 | 85 |
| EU256019.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V61/2001, complete | 1030 | __................c.. | 1048 | 85 |
| EU256021.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V64/2003, complete | 1026 | __................c.. | 1044 | 85 |
| EU256022.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V65/2003, complete | 1025 | __................c.. | 1043 | 85 |
| EU256023.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V67/2003, complete | 1034 | __................c.. | 1052 | 85 |
| EU256028.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V84/2001, complete | 1034 | __................c.. | 1052 | 85 |
| EU256029.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V85/2001, complete | 1021 | __................c.. | 1039 | 85 |
| EU256030.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V87/2002, complete | 1017 | __.............g..... | 1035 | 85 |
| EU256032.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V92/2003, complete | 1032 | __................c.. | 1050 | 85 |
| EU256033.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V94/2005, complete | 1035 | __................c.. | 1053 | 85 |
| EU256034.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V95/2006, complete | 1035 | __................c.. | 1053 | 85 |
| EU256035.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V96/2004, complete | 1034 | __................c.. | 1052 | 85 |
| EU256040.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V18/2004, complete | 1034 | __................c.. | 1052 | 85 |
| EU256041.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V2/2005, complete | 1039 | __................c.. | 1057 | 85 |
| EU256046.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V392/2006, complet | 1034 | __................c.. | 1052 | 85 |
| EU256055.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V6/2001, complete | 1030 | __................c.. | 1048 | 85 |
| EU256056.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V7/2003, complete | 1005 | __................c.. | 1023 | 85 |
| EU256057.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V702/2006, complet | 1042 | __................c.. | 1060 | 85 |
| EU256069.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V229/2006, complet | 1015 | __................c.. | 1033 | 85 |
| EU256071.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V234/2004, complet | 1003 | __................c.. | 1021 | 85 |
| EU256072.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V238/2005, complet | 1015 | __................c.. | 1033 | 85 |
| EU255965.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V168/1990, complet | 1032 | __................c.. | 1050 | 85 |
| EU255969.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V174/1992, complet | 1030 | __................c.. | 1048 | 85 |
| EU255970.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V176/1992, complet | 1026 | __................c.. | 1044 | 85 |
| EU255975.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V183/1994, complet | 1033 | __................c.. | 1051 | 85 |
| EU255979.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V189/1991, complet | 1035 | __................c.. | 1053 | 85 |
| EU255983.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V195/1990, complet | 1027 | __................c.. | 1045 | 85 |
| EU255987.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V205/1989, complet | 1016 | __................c.. | 1034 | 85 |
| EU255988.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V206/1995, complet | 1024 | __................c.. | 1042 | 85 |
| EU255989.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V208/1990, complet | 1041 | __................c.. | 1059 | 85 |
| EU255990.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V209/1992, complet | 1033 | __.............g..... | 1051 | 85 |
| EU255991.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V210/1989, complet | 1023 | __................c.. | 1041 | 85 |
| EU255992.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V213/1992, complet | 1029 | __................c.. | 1047 | 85 |
| FJ024274.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1707/2007, comple | 961 | __................c.. | 979 | 85 |
| FJ024282.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1719/2005, comple | 1020 | __................c.. | 1038 | 85 |
| EU862824.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V31/2004, partial | 1025 | __................c.. | 1043 | 85 |
| EU862826.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V198/1989, partial | 1025 | __................c.. | 1043 | 85 |
| FJ182000.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1712/2007, comple | 1002 | __................c.. | 1020 | 85 |
| FJ182001.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1716/2007, comple | 1026 | __.............c..... | 1044 | 85 |
| FJ205868.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1714/2007, comple | 1012 | __.............g..... | 1030 | 85 |
| FJ205869.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1720/2006, comple | 1002 | __.............g..... | 1020 | 85 |
| FJ390394.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1745/2008, comple | 1018 | __................c.. | 1036 | 85 |
| FJ390395.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1747/2008, comple | 995 | __................c.. | 1013 | 85 |
| EU781804.1 | Hepatitis C virus subtype 1a isolate 02-46, complete genome | 1023 | __................c.. | 1041 | 85 |
| EU781823.1 | Hepatitis C virus subtype 1a isolate 03-12, complete genome | 1031 | __................c.. | 1049 | 85 |
| AB520610.1 | Hepatitis C virus subtype 1a genomic RNA, complete genome, strain: HC | 1108 | __................c.. | 1126 | 85 |
| EU862832.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V27/2003, complete | 1022 | __................c.. | 1040 | 85 |
| EU862836.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V244/2003, complet | 1034 | __..............t.... | 1052 | 85 |
| EU862838.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V165/1992, complet | 1045 | __................c.. | 1063 | 85 |
| EU862841.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V48/2003, complete | 1023 | __................c.. | 1041 | 85 |
| EF407414.1 | Hepatitis C virus isolate 7018 polyprotein gene, complete cds | 1010 | _..............a..c.. | 1029 | 85 |
| EF407438.1 | Hepatitis C virus isolate 7012 polyprotein gene, complete cds | 1054 | _.t...............c.. | 1073 | 85 |
| EF407453.1 | Hepatitis C virus isolate 4035 polyprotein gene, complete cds | 1054 | _..............c..c.. | 1073 | 85 |
| EU362884.1 | Hepatitis C virus isolate 4035_FU24 polyprotein (pol) gene, complete | 1069 | _..............c..c.. | 1088 | 85 |
| EU362892.1 | Hepatitis C virus isolate 7012_FU24 polyprotein (pol) gene, complete | 1052 | _.t...............c.. | 1071 | 85 |
| EU155249.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V337/2006, complet | 1024 | _..............c..c.. | 1043 | 85 |
| EU256068.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V405/2006, complet | 1027 | _.t...............c.. | 1046 | 85 |
| EU256036.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V97/2004, complete | 1033 | _.a...............c.. | 1052 | 85 |
| EU155252.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V362/2006, complet | 1026 | ___...............c.. | 1043 | 80 |
| EU155340.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V185/1991, complet | 1004 | ___............g..... | 1021 | 80 |
| EU595699.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V78/2001, complete | 1018 | ___...............c.. | 1035 | 80 |
| EU255937.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V700/2006, complet | 1026 | ___...............c.. | 1043 | 80 |
| EU256014.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V56/2004, complete | 1004 | ___............g..... | 1021 | 80 |
| EU862840.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V40/2003, complete | 1050 | ___............g..... | 1067 | 80 |
| EU781824.1 | Hepatitis C virus subtype 1a isolate DN14, complete genome | 1015 | __................___ | 1030 | 76 |
| EU155233.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V445/2006, complet | 1033 | .a.a..............c.. | 1053 | 85 |
| EU155288.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V322/2002, complet | 1023 | .a.............c..c.. | 1043 | 85 |
| EU529678.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V63/2005, complete | 1020 | .a.............g..c.. | 1040 | 85 |
| EU569723.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V13/2005, complete | 1025 | .a.............c..c.. | 1045 | 85 |
| EU255940.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V433/2006, complet | 1039 | .a.............c..c.. | 1059 | 85 |
| EU255941.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V697/2006, complet | 1038 | .a.............c..c.. | 1058 | 85 |
| EU256002.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V41/2006, complete | 1047 | .a.a..............c.. | 1067 | 85 |
| EU256024.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V72/2006, complete | 1001 | .a...c............c.. | 1021 | 85 |
| FJ024278.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1713/2007, comple | 1000 | .a.............c..c.. | 1020 | 85 |
| FJ024281.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1718/2007, comple | 1030 | .a.............c..c.. | 1050 | 85 |
| GQ149768.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V2147/2002, comple | 1017 | .a.c..............c.. | 1037 | 85 |
| EF407417.1 | Hepatitis C virus isolate 4040 polyprotein gene, complete cds | 1067 | __.............c..c.. | 1085 | 80 |
| EF407425.1 | Hepatitis C virus isolate 6071 polyprotein gene, complete cds | 1022 | __.............a..c.. | 1040 | 80 |
| EF407442.1 | Hepatitis C virus isolate 8012 polyprotein gene, complete cds | 1022 | __.............c..c.. | 1040 | 80 |
| EF407446.1 | Hepatitis C virus isolate 8009 polyprotein gene, complete cds | 1029 | __.............c..c.. | 1047 | 80 |
| EF407456.1 | Hepatitis C virus isolate 4025 polyprotein gene, complete cds | 1067 | __.............c..c.. | 1085 | 80 |
| EU362876.1 | Hepatitis C virus isolate 1013_FU24 polyprotein (pol) gene, complete | 1067 | __.............c..c.. | 1085 | 80 |
| EU362883.1 | Hepatitis C virus isolate 4025_FU24 polyprotein (pol) gene, partial c | 1067 | __.............c..c.. | 1085 | 80 |
| EU362886.1 | Hepatitis C virus isolate 5014_FU24 polyprotein (pol) gene, complete | 1030 | __.............c..c.. | 1048 | 80 |
| EU362903.1 | Hepatitis C virus isolate 4025q polyprotein (pol) gene, partial cds | 1067 | __.............c..c.. | 1085 | 80 |
| EU239713.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V316/2001, complet | 1056 | __.............a..c.. | 1074 | 80 |
| EU250017.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V508/2001, complet | 1025 | __.............a..c.. | 1043 | 80 |
| EU155236.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V450/2006, complet | 999 | __..g.............c.. | 1017 | 80 |
| EU155237.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V457/2006, complet | 1049 | __.............c..c.. | 1067 | 80 |
| EU155240.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V68/2004, complete | 1026 | __.............c..c.. | 1044 | 80 |
| EU155245.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V91/2003, complete | 1026 | __.a..............c.. | 1044 | 80 |
| EU155246.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V93/2003, complete | 1027 | __.a..............c.. | 1045 | 80 |
| EU482861.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V446/2006, complet | 1034 | __.a..............c.. | 1052 | 80 |
| EU482864.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V459/2006, complet | 1041 | __.............g...g. | 1059 | 80 |
| EU482870.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V75/2004, complete | 1049 | __.............g..c.. | 1067 | 80 |
| EU482876.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V330/2002, complet | 1034 | __....c...........c.. | 1052 | 80 |
| EU482878.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V19/2004, complete | 1034 | __.............c..c.. | 1052 | 80 |
| EU155247.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1/2005, complete | 1032 | __.............c..c.. | 1050 | 80 |
| EU155250.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V358/2006, complet | 1033 | __..........g..g..... | 1051 | 80 |
| EU155266.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V390/2006, complet | 977 | __.............c..c.. | 995 | 80 |
| EU155267.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V391/2006, complet | 1014 | __.............a..c.. | 1032 | 80 |
| EU155269.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V398/2006, complet | 1027 | __..........g.....c.. | 1045 | 80 |
| EU155271.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V401/2006, complet | 1030 | __.............a..c.. | 1048 | 80 |
| EU155277.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V434/2003, complet | 1003 | __.............c..c.. | 1021 | 80 |
| EU155278.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V437/2006, complet | 1018 | __.............c..c.. | 1036 | 80 |
| EU155283.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V698/2006, complet | 1041 | __.............c..c.. | 1059 | 80 |
| EU155292.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V327/2001, complet | 1035 | __..........g.....c.. | 1053 | 80 |
| EU155297.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V333/2002, complet | 1024 | __..............t.c.. | 1042 | 80 |
| EU155311.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V411/2003, complet | 1034 | __.............c..c.. | 1052 | 80 |
| EU155353.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V267/2005, complet | 1026 | __.............c..c.. | 1044 | 80 |
| EU155354.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V269/2005, complet | 1033 | __.............c..c.. | 1051 | 80 |
| EU155355.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V270/2006, complet | 1032 | __..........g.....c.. | 1050 | 80 |
| EU660384.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V55/2005, complete | 1056 | __.a..............c.. | 1074 | 80 |
| EU687194.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V1563/2004, comple | 1035 | __.............c..c.. | 1053 | 80 |
| EU687195.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V1564/2007, comple | 1042 | __..........g.....c.. | 1060 | 80 |
| EU255936.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V510/2006, complet | 1035 | __..............t.c.. | 1053 | 80 |
| EU255938.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V88/2003, complete | 1040 | __.............c..c.. | 1058 | 80 |
| EU255939.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V408/2006, complet | 1027 | __..........g.....c.. | 1045 | 80 |
| EU255943.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V223/2003, complet | 1027 | __.a..............c.. | 1045 | 80 |
| EU255947.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V228/2006, complet | 1041 | __.a..............c.. | 1059 | 80 |
| EU255948.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V230/2003, complet | 1036 | __.............c..c.. | 1054 | 80 |
| EU255953.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V248/2006, complet | 1031 | __.............c..c.. | 1049 | 80 |
| EU255956.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V259/2003, complet | 1035 | __.............c..c.. | 1053 | 80 |
| EU256067.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V402/2006, complet | 1035 | __..........g.....c.. | 1053 | 80 |
| EU256104.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V430/2005, complet | 1025 | __.............c..c.. | 1043 | 80 |
| EU256106.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V32/2004, complete | 1026 | __..........g.....c.. | 1044 | 80 |
| EU155347.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V239/2005, complet | 1019 | __.............c..c.. | 1037 | 80 |
| EU255994.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V103/2005, complet | 1018 | __.............c..c.. | 1036 | 80 |
| EU255995.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V106/2004, complet | 1033 | __.............c..c.. | 1051 | 80 |
| EU256008.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V47/2002, complete | 1003 | __....a...........c.. | 1021 | 80 |
| EU256013.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V53/2004, complete | 1032 | __.............c..c.. | 1050 | 80 |
| EU256017.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V59/2005, complete | 1030 | __.............c..c.. | 1048 | 80 |
| EU256020.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V62/2003, complete | 1032 | __.............a..c.. | 1050 | 80 |
| EU256031.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V89/2006, complete | 1032 | __...............gc.. | 1050 | 80 |
| EU256038.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V99/2004, complete | 1039 | __.............g..c.. | 1057 | 80 |
| EU256039.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V16/2004, complete | 1027 | __.............a..c.. | 1045 | 80 |
| EU256043.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V3/2005, complete | 1003 | __.............c..c.. | 1021 | 80 |
| EU256052.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V403/2006, complet | 1033 | __.............c..c.. | 1051 | 80 |
| EU256053.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V440/2001, complet | 1035 | __.a..............c.. | 1053 | 80 |
| EU255964.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V167/1992, complet | 1018 | __.............c..c.. | 1036 | 80 |
| EU255967.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V171/1997, complet | 1013 | __.............c..c.. | 1031 | 80 |
| EU255978.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V188/1991, complet | 1022 | __.............c..c.. | 1040 | 80 |
| EU255985.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V201/1991, complet | 1037 | __..........g.....c.. | 1055 | 80 |
| FJ181999.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1706/2007, comple | 1019 | __.............c..c.. | 1037 | 80 |
| EU862828.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V12/2004, complete | 1041 | __.............c..c.. | 1059 | 80 |
| EF407433.1 | Hepatitis C virus isolate 7046 polyprotein gene, complete cds | 1060 | ___............c..c.. | 1077 | 76 |
| EF407443.1 | Hepatitis C virus isolate 7024 polyprotein gene, complete cds | 1069 | ___...a...........c.. | 1086 | 76 |
| EF407454.1 | Hepatitis C virus isolate 6031 polyprotein gene, complete cds | 1021 | ___.........g.....c.. | 1038 | 76 |
| EU362896.1 | Hepatitis C virus isolate 7046_FU24 polyprotein (pol) gene, complete | 1068 | ___............c..c.. | 1085 | 76 |
| EU255954.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V252/2002, complet | 1034 | ___............g..c.. | 1051 | 76 |
| EU256003.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V444/2006, complet | 1042 | ___............g..c.. | 1059 | 76 |
| EU255951.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V245/2005, complet | 1038 | .a.a.............gc.. | 1058 | 80 |
| EU155214.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V104/2005, complet | 1034 | __..........g..c..c.. | 1052 | 76 |
| AY878651.1 | Hepatitis C virus subtype 6k isolate KM41, complete genome | 3124 | _.........g....._____ | 3110 | 66 |
| DQ278893.1 | Hepatitis C virus subtype 6k isolate KM41, complete genome | 3156 | _.........g....._____ | 3142 | 66 |
| EU158186.1 | Hepatitis C virus isolate NK46, complete genome | 7460 | ............_________ | 7471 | 57 |
| EU798761.1 | Hepatitis C virus subtype 6v isolate KM046 polyprotein precursor, gen | 7460 | ............_________ | 7471 | 57 |